PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g003280.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 327aa    MW: 36606.1 Da    PI: 4.5169
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g003280.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.94.5e-1962150197
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     ffkv+++  ++    + +p +f+e    +   + t +l+ + gr W+v +  +k +++ ++t+GW++F+++++L +g+f++F +dg+++f   v+
  Csa07g003280.1  62 FFKVFVSQTAS--ESFAIPLSFIEFLADP--LPNTAKLQGTGGRDWTVSM--KKIRDGAYFTAGWSKFAQDHELVDGEFLTFVYDGNRTF--EVS 148
                     89999555554..458*******777655..889****************..*********************************98888..777 PP

                     EE CS
              B3  96 vf 97 
                     vf
  Csa07g003280.1 149 VF 150
                     76 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.3E-2259154IPR015300DNA-binding pseudobarrel domain
CDDcd100176.73E-1860150No hitNo description
Gene3DG3DSA:2.40.330.106.9E-2260152IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.46560153IPR003340B3 DNA binding domain
SMARTSM010191.1E-1962153IPR003340B3 DNA binding domain
PfamPF023625.7E-1662150IPR003340B3 DNA binding domain
SuperFamilySSF1019361.31E-7227318IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.4E-6227318IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.17231321IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
LTPFSFILTL SLSAIVTISH RRLYCIPLSL AQRPISTLPS SLASYISMAE PEHDDDVLFP  60
RFFKVFVSQT ASESFAIPLS FIEFLADPLP NTAKLQGTGG RDWTVSMKKI RDGAYFTAGW  120
SKFAQDHELV DGEFLTFVYD GNRTFEVSVF GRLGCKETRA EAETLELSGS SSDDSEEDEE  180
PSMDVDYDIS LGEDEEISQS LYPFEDEETE SDAAAVFEGN VDVKALTNPH FPTTLKNRNN  240
ELIIPASVVR ENELIFGDSV KYIDGEGTLV GLRGKWAVDT VCFKGWNRIC RRNRLKKHQD  300
TVECELLHDR EKMVHSIRVH VIRGTA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A1e-216115510104At1g16640
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010413386.10.0PREDICTED: B3 domain-containing protein REM20-like isoform X1
RefseqXP_010413387.10.0PREDICTED: B3 domain-containing protein REM20-like isoform X2
SwissprotQ8LAV51e-128REM20_ARATH; B3 domain-containing protein REM20
TrEMBLR0HPM71e-159R0HPM7_9BRAS; Uncharacterized protein
STRINGscaffold_502422.11e-141(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15612380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.11e-122B3 family protein